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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92083328_92084712_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92083328 - 92084712
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTATTGCAACT
Flanking Amino Acid:
KYHLDTVNIELCAQSLTRGA
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
46.1
-0.2
2.2
67.86
43.5

Associated Gene:

Gene:
B3GAT2
Ensembl Gene ID:
ENSAPLG00000017791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024399
92079703 - 92105929
26227