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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92084794_92084868_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92084794 - 92084868
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GCTGTACTAACA
Flanking Amino Acid:
LEPKANNCTKVLVWHTRTEK
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.7
0.62
0.9
72.1
38
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
45.8
-0.3
2
57.43
41.8

Associated Gene:

Gene:
B3GAT2
Ensembl Gene ID:
ENSAPLG00000017791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024399
92079703 - 92105929
26227