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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92085018_92092988_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92085018 - 92092988
Intron Length:
7971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACC
Flanking Amino Acid:
ADRPFAIDMAGFAVSLQVIL
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84
0.76
0.9
83.6
31.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
B3GAT2
Ensembl Gene ID:
ENSAPLG00000017791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024399
92079703 - 92105929
26227