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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92091310_92092988_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92091310 - 92092988
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTATTTTAAGT
Flanking Amino Acid:
ADRPFAIDMAGTQRKGTIRT
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.4
0.59
0.8
73.9
30.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
61
0.42
1.7
76.69
40.1

Associated Gene:

Gene:
B3GAT2
Ensembl Gene ID:
ENSAPLG00000017791
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017893
92091008 - 92105929
14922