Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92129610_92131601_F

Intron Information:

Intron Rank:

129213

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

92129610 - 92131601

Intron Length:

1992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTGTTTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

CTGATGGTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

30.2

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

57.1

0.16

1.7

68.3

42.2

Minor 5ss

41.4

-1

2.9

49.9

46.4

Minor BPS

38.9

-0.8

2.5

49.56

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019508

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045567

92129394 - 92137466

8073

ENSAPLT00000020020

92129394 - 92137466

8073