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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92131719_92131881_F

Intron Information:

Intron Rank:
129217
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
92131719 - 92131881
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-TG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGGCACTG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ACACTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
40.1
-0.5
3.2
56.6
43.4
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
48.3
-0
1.5
60.91
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019508
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045567
92129394 - 92137466
8073