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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92131719_92135197_F

Intron Information:

Intron Rank:
129214
Intron Class:
major
Intron Phase:
Intron Coordinates:
92131719 - 92135197
Intron Length:
3479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.6
0.82
0.8
80.7
35.9
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
54.2
0.21
2
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019508
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020020
92129394 - 92137466
8073