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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92228407_92229997_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92228407 - 92229997
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAACC
Flanking Amino Acid:
NWQERFQHLNESQHNYLRIT
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.7
0.6
1
78.7
27.4
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
59.1
0.27
1.5
69.4
35.8

Associated Gene:

Gene:
OGFRL1
Ensembl Gene ID:
ENSAPLG00000011967
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012450
92227647 - 92236787
9141