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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92230350_92230441_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92230350 - 92230441
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
KLEHNHTYIQWLFPLREQGL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
66.2
39.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
31
-2.2
2.7
34.5
34.8
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
OGFRL1
Ensembl Gene ID:
ENSAPLG00000011967
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012450
92227647 - 92236787
9141