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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92230521_92233628_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92230521 - 92233628
Intron Length:
3108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTCCAAATT
Flanking Amino Acid:
YKNKIPFKPDGVYIEEVLNK
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.9
81.6
34.7
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
49.5
0.04
2
71.33
39.9

Associated Gene:

Gene:
OGFRL1
Ensembl Gene ID:
ENSAPLG00000011967
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012450
92227647 - 92236787
9141