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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92234401_92235965_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92234401 - 92235965
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
TTAAACGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAC
Flanking Amino Acid:
AEADTASPEQNSDGTELTAK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.9
0.47
1
66.2
44.6
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
71.3
0.65
1.3
76.34
33.2

Associated Gene:

Gene:
OGFRL1
Ensembl Gene ID:
ENSAPLG00000011967
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012450
92227647 - 92236787
9141