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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92321176_92323780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92321176 - 92323780
Intron Length:
2605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTCC
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGGAAGTTACCT
Flanking Amino Acid:
ARLILYHMEQGMSPEMAADT
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.9
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
46.9
-0.3
2.5
62.3
42.5
Minor BPS
40.4
-0.6
2.3
55.24
45.9

Associated Gene:

Gene:
ASRGL1
Ensembl Gene ID:
ENSAPLG00000011850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012339
92320545 - 92338891
18347