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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92325891_92329555_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92325891 - 92329555
Intron Length:
3665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTTTGTGAACT
Flanking Amino Acid:
EPDSNPEEFQKDLGTVGAVA
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
86.4
0.82
0.9
84.7
30.1
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
58.8
0.35
2.2
82.91
38.1

Associated Gene:

Gene:
ASRGL1
Ensembl Gene ID:
ENSAPLG00000011850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012339
92320545 - 92338891
18347