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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92553586_92576594_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92553586 - 92576594
Intron Length:
23009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CATATTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCTATTCATA
Flanking Amino Acid:
EIESESVSEKGDLDYYWLDP
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79
0.65
0.9
69.6
41.2
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
49.5
-0
2
69.42
37

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676