About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92583737_92590671_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92583737 - 92590671
Intron Length:
6935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
GTTCATGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCCTAATT
Flanking Amino Acid:
QVEIIVSRPIGDIPRIPESS
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.6
42.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.8
0.51
0.9
69.7
41.2
Minor 5ss
33.9
-1.8
3.4
39.2
46.1
Minor BPS
67.7
0.64
1.6
84.04
37.1

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676