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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92590719_92591794_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92590719 - 92591794
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CACATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACAT
Flanking Amino Acid:
PESSHPPLESSSSSFESQKM
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.8
34.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
69.6
0.44
0.9
66.1
39.4
Minor 5ss
32.8
-2
2.7
40.4
39.1
Minor BPS
50.7
0.1
1.9
74.04
42.5

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676