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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92593527_92593651_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92593527 - 92593651
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATATAT
5'SS Class:
major
3'SS Sequence:
ATTTTTCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATGCCTTTAAAA
Flanking Amino Acid:
QEEESEFLGEILIELETALL
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
75.7
29.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.2
0.61
0.9
71.8
38.7
Minor 5ss
34.2
-1.8
3.2
47.2
48.2
Minor BPS
63.9
0.43
1.4
68.61
37.4

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043843
92522040 - 92717715
195676
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676