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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92595474_92600587_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92595474 - 92600587
Intron Length:
5114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CTCTTAACAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTCTCTAATT
Flanking Amino Acid:
VDDGIGVVPPAYRSSARESK
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
64.7
0.33
0.9
60.7
34
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
69.9
0.7
1.6
85.86
34

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043843
92522040 - 92717715
195676
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676