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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92602958_92607248_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92602958 - 92607248
Intron Length:
4291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCAT
5'SS Class:
major
3'SS Sequence:
CCTGTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
TTTCACTCACCA
Flanking Amino Acid:
MDSQYLSDQESELLMLPRAK
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
71.4
40.2
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
74
0.54
1
68.4
37.3
Minor 5ss
34.2
-1.8
3.3
49.6
46.6
Minor BPS
49.9
-0
2
70.54
41.1

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676