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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92607312_92611501_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
92607312 - 92611501
Intron Length:
4190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GCACTGGCACTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTGGAT
U12 Branch Point Sequence:
TTCTCTTCTACC
Flanking Amino Acid:
GRSAECLHTISELQPSLDRA
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
62.6
0.31
1.4
63.1
44.4
Major PPT
49.6
-0
1
40
39
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
56.2
0.18
1.9
70.7
41

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676