Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92611592_92617479_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

92611592 - 92617479

Intron Length:

5888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAAAAT

5'SS Class:

major

3'SS Sequence:

AACGGGCAAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TTTTATTGAACG

Flanking Amino Acid:

DTSLHSPERERGRWSPSLER

Intron Amino Acid Position:

820

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

75.8

33.1

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

48.1

-0.1

1.1

36.4

38.9

Minor 5ss

40.6

-1.1

57.1

47.2

Minor BPS

64.1

0.3

1.7

73.41

38.8

Associated Gene:

Gene:

RIMS1

Ensembl Gene ID:

ENSAPLG00000010534

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010966

92522040 - 92717715

195676

ENSAPLT00000020705

92546488 - 92717715

171228