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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92611592_92622780_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92611592 - 92622780
Intron Length:
11189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAT
5'SS Class:
major
3'SS Sequence:
AAATTTTGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTTTCCAAATT
Flanking Amino Acid:
DTSLHSPERERTRTLESCIP
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
75.8
33.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
60.1
0.23
1.2
60.8
43.9
Minor 5ss
40.6
-1.1
3
57.1
47.2
Minor BPS
53.3
0.18
2
76.83
40

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228