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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92625098_92628881_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92625098 - 92628881
Intron Length:
3784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
AACAACTGAACG
Flanking Amino Acid:
TRKGSTTETERGLLPCLSRR
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
68.7
0.42
1
65.1
40.9
Minor 5ss
40.2
-1.1
3.4
55.2
49
Minor BPS
47.6
-0.3
1.7
50.27
42.8

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043843
92522040 - 92717715
195676
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676