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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92629065_92630403_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92629065 - 92630403
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCTATT
5'SS Class:
major
3'SS Sequence:
ATTTCATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATGTTCATT
Flanking Amino Acid:
GSAPPSPLLTRIHQQGSPTQ
Intron Amino Acid Position:
933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.4
73.9
42.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.2
0.7
0.8
74.8
34.4
Minor 5ss
42.2
-0.9
3
60.5
43.9
Minor BPS
47.8
-0
2.4
75.63
41.8

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676