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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92630517_92645881_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92630517 - 92645881
Intron Length:
15365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTCTTTTTAATT
Flanking Amino Acid:
VPVRSGSIEQASLVVEERTR
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
73.4
37.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.9
0.81
0.8
80.6
37
Minor 5ss
46.8
-0.3
2.7
66.2
44.9
Minor BPS
71
0.74
1.2
78.3
39.3

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043843
92522040 - 92717715
195676
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676