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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92676511_92708915_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92676511 - 92708915
Intron Length:
32405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATCTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTATCT
Flanking Amino Acid:
SRSTSQLSQTESGNKKLKST
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78
0.63
0.9
74.2
39.9
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
58.9
0.36
1.9
83.9
37.2

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676
ENSAPLT00000043843
92522040 - 92717715
195676