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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92712976_92715693_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92712976 - 92715693
Intron Length:
2718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GCTTCTTTAAAA
Flanking Amino Acid:
GRQTLATPAMGDIQIGMVDK
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.8
33.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
87.3
0.84
0.7
84.9
22.7
Minor 5ss
36.6
-1.5
3
41.3
44.8
Minor BPS
70.5
0.64
1.4
73.23
38.5

Associated Gene:

Gene:
RIMS1
Ensembl Gene ID:
ENSAPLG00000010534
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043843
92522040 - 92717715
195676
ENSAPLT00000025216
92546488 - 92717715
171228
ENSAPLT00000020705
92546488 - 92717715
171228
ENSAPLT00000010966
92522040 - 92717715
195676