Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92807416_92813823_R

Intron Information:

Intron Rank:

135389

Intron Class:

major

Intron Phase:

Intron Coordinates:

92807416 - 92813823

Intron Length:

6408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

AATTGTTTTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

AATTTATTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

76.1

0.59

0.9

70.3

40.3

Minor 5ss

27.2

-2.6

33.9

41.8

Minor BPS

59.4

0.29

1.7

69.61

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020256

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022405

92807324 - 92814190

6867