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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93034365_93049930_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93034365 - 93049930
Intron Length:
15566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
KLASGCLFILEFVMIVVFGL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
KCNQ5
Ensembl Gene ID:
ENSAPLG00000010359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010802
92835356 - 93117409
282054