About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93071905_93072328_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93071905 - 93072328
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
LGSVVYAHSKELITAWYIGF
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
87.2
29.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82.8
0.74
0.8
77.6
35.8
Minor 5ss
36.3
-1.5
3
50.7
45.8
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
KCNQ5
Ensembl Gene ID:
ENSAPLG00000010359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010802
92835356 - 93117409
282054