About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93079967_93081746_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93079967 - 93081746
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTCTTGTATT
Flanking Amino Acid:
LGISFFALPAGILGSGFALK
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
56.9
0.3
1.8
77.3
39.6

Associated Gene:

Gene:
KCNQ5
Ensembl Gene ID:
ENSAPLG00000010359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010802
92835356 - 93117409
282054