About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93085227_93087452_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
93085227 - 93087452
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
CCCTGACCTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
ACTCCCTGACCT
Flanking Amino Acid:
LKALHTCSPTKKEQGEASSS
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.4
36
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
58.3
0.19
1
56.5
32.8
Minor 5ss
36.3
-1.5
3
43.1
38
Minor BPS
55.1
0.24
1.8
72.92
43.5

Associated Gene:

Gene:
KCNQ5
Ensembl Gene ID:
ENSAPLG00000010359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010802
92835356 - 93117409
282054