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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93108182_93114937_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93108182 - 93114937
Intron Length:
6756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TGCTTTTTCACC
Flanking Amino Acid:
PALKTVIRAIRIMKFHVAKR
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
81
26.9
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
76.8
0.6
0.9
70.4
40
Minor 5ss
35.7
-1.6
2.6
41.3
45.3
Minor BPS
56.3
0.18
1.7
65.82
40.4

Associated Gene:

Gene:
KCNQ5
Ensembl Gene ID:
ENSAPLG00000010359
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010802
92835356 - 93117409
282054