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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93128020_93128093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93128020 - 93128093
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTT
5'SS Class:
major
3'SS Sequence:
TGTTTTATGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTGTTTTATGT
Flanking Amino Acid:
IGFQKPTPIQSQAWPIILQG
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
78.3
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.7
0.53
1
74.7
40
Minor 5ss
37.6
-1.4
3.6
58.4
46.1
Minor BPS
48.4
-0
1.9
68.89
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010182
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010609
93122884 - 93139051
16168