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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9312814_9314741_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9312814 - 9314741
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
LSESFALSTSVAVVEQKNRK
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.7
88.4
27.5
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
ETAA1
Ensembl Gene ID:
ENSAPLG00000025999
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029971
9311625 - 9320251
8627