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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93132061_93132672_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93132061 - 93132672
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTTGTCATT
Flanking Amino Acid:
VRPDRQTIMTSATWPDGVRR
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.1
0.54
0.8
70.9
29.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
46.5
-0.1
2.3
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010182
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010609
93122884 - 93139051
16168