About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93134632_93136126_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93134632 - 93136126
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TATTTCATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTCATC
Flanking Amino Acid:
KVIIFVGKKVTADDLASDFS
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
79.7
35.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.5
0.6
0.8
75
34.2
Minor 5ss
44.9
-0.6
2.6
58.7
39.4
Minor BPS
58.2
0.24
1.9
74.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010182
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010609
93122884 - 93139051
16168