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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93136919_93137700_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93136919 - 93137700
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
VHRVGRTGRAGRTGEAITLV
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.8
0.6
1
69
41.8
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010182
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010609
93122884 - 93139051
16168