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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93137789_93138943_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93137789 - 93138943
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTGTTCTTATCA
Flanking Amino Acid:
LIDILERAKQVVPDELISMA
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.6
0.58
1
74.5
40.1
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
64.6
0.45
1.6
71.53
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010182
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010609
93122884 - 93139051
16168