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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93142981_93143993_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93142981 - 93143993
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
ATTTATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACA
Flanking Amino Acid:
CCETDGAKCCRKDCLKLLKY
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.5
0.64
1
74.1
39.5
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
75.7
0.8
1.4
82.86
31

Associated Gene:

Gene:
CGAS
Ensembl Gene ID:
ENSAPLG00000010154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021742
93142638 - 93147774
5137
ENSAPLT00000010568
93142638 - 93148108
5471