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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_931439_933596_F

Intron Information:

Intron Rank:
132344
Intron Class:
major
Intron Phase:
Intron Coordinates:
931439 - 933596
Intron Length:
2158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
TTTGGTCGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTCCAGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
70.3
0.46
1
62.5
44.3
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
47
-0.1
2.1
71.41
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021107
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025898
885192 - 934148
48957
ENSAPLT00000028305
884622 - 933677
49056