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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93147677_93147787_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
93147677 - 93147787
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTACCGGCA
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GTGTCCCTGTGT
Flanking Amino Acid:
LLLTHRIGTIGQLSCNPSFG
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
49.1
41.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
64.6
0.33
0.7
61.4
21.6
Minor 5ss
34.5
-1.8
3.7
47.2
48.3
Minor BPS
36.7
-0.9
3.6
64.44
46

Associated Gene:

Gene:
MTO1
Ensembl Gene ID:
ENSAPLG00000009903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010326
93147481 - 93155483
8003