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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93147988_93149473_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93147988 - 93149473
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CCTTTCATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTGCAGTAACT
Flanking Amino Acid:
DRGLYRDNMRKEILNTPLLT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
56.8
42.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
73
0.52
1
68.9
35.9
Minor 5ss
23.9
-3
3
21
37.4
Minor BPS
56.3
0.28
2.3
84.99
41.5

Associated Gene:

Gene:
MTO1
Ensembl Gene ID:
ENSAPLG00000009903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010326
93147481 - 93155483
8003