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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93153376_93153903_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93153376 - 93153903
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
CCTACCATAAAA
Flanking Amino Acid:
HLSSNRRSPMSAFDMLQYPE
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
81.6
0.71
0.8
76.7
32.1
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
51.2
0.04
1.8
62.42
43.3

Associated Gene:

Gene:
MTO1
Ensembl Gene ID:
ENSAPLG00000009903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010326
93147481 - 93155483
8003