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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93154023_93154519_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93154023 - 93154519
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTATAT
U12 Branch Point Sequence:
TTGTCTATCACA
Flanking Amino Acid:
RELSERLKIEAAYEWCVVNQ
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
66.7
0.41
1.1
63.2
42.8
Major PPT
78.5
0.64
0.9
73.1
36
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
53.9
0.12
2
71.81
40.6

Associated Gene:

Gene:
MTO1
Ensembl Gene ID:
ENSAPLG00000009903
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010326
93147481 - 93155483
8003