Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93167201_93167365_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

93167201 - 93167365

Intron Length:

165

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTACGTGTT

5'SS Class:

major

3'SS Sequence:

TTCTCTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

AATCACTGGATT

Flanking Amino Acid:

LPLQDVYKIGGIGTVPVGRV

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

76.7

38.9

Major BPS

0.72

78.4

31.2

Major PPT

88.7

0.87

0.6

84.5

23.3

Minor 5ss

-1.3

3.6

58.2

46.4

Minor BPS

48.5

-0

1.7

65.9

Associated Gene:

Gene:

EEF1A1

Ensembl Gene ID:

ENSAPLG00000009349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026404

93165010 - 93169349

4340

ENSAPLT00000009802

93166010 - 93169397

3388