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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9317310_9318854_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9317310 - 9318854
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTAATCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAAGCATTACAA
Flanking Amino Acid:
SEIVNRIAPQDEKAACNEGS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
34.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.7
0.53
1
70.4
39.9
Minor 5ss
38.5
-1.3
3.2
52
45.2
Minor BPS
45.2
-0.3
2
56.12
42.2

Associated Gene:

Gene:
ETAA1
Ensembl Gene ID:
ENSAPLG00000025999
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029971
9311625 - 9320251
8627