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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9318932_9319203_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9318932 - 9319203
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATATTA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAG
Flanking Amino Acid:
DPHSPIARGLGNEKNKRSTR
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
71
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.8
77.1
37.1
Minor 5ss
42.1
-0.9
3.1
57.2
46.9
Minor BPS
66.7
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
ETAA1
Ensembl Gene ID:
ENSAPLG00000025999
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029971
9311625 - 9320251
8627