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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93191377_93192846_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93191377 - 93192846
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CCCAATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
TCTTCCCCAATT
Flanking Amino Acid:
PVIAKSLTHNNTVGEWQTVF
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.3
42.6
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
64.8
0.33
1
59.5
40.2
Minor 5ss
37
-1.5
2.9
47.4
41
Minor BPS
60.6
0.41
1.9
81.02
40.9

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995