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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_93192938_93197793_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93192938 - 93197793
Intron Length:
4856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TAAGCCTTGATG
Flanking Amino Acid:
YSINHLDIAPSYAGILLGIT
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
79.6
35.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
37.7
-1.4
3
52
39.1
Minor BPS
60.1
0.17
1.5
59.89
42.3

Associated Gene:

Gene:
SLC17A5
Ensembl Gene ID:
ENSAPLG00000008535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008916
93191239 - 93212233
20995